I just learned I am severely deficient in calcium, gallic acid, glutamine, iron, omega-3 fatty acids, potassium, zinc, selenium, vanadium and D3. I eat foods that are supposed to be sources for these so I am confused and concerned. Help!

Please continue with the program. Because of dysbiosis, you are likely not absorbing your nutrition, but this program should improve this within 4-12 weeks (when you work up to full terraforming). In the meantime, make certain you are taking your digestive enzymes all the way through the entire program along with fish oil and vitamin D3. You can take liquid Floradix (better absorption with constipation) for the iron deficiency and then order Systemic Formulas Spectra Two liquid multivitamin from Jack's office: http://systemicformulasmedia.com/872-spectra-two/